Tutorials

Step by step tutorial. (PDF Format): Tutorial

References

Cai Y, Hartnett B, Gustafsson C, Peccoud J (2007) A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts. Bioinformatics 23(20): 2760-2767.

Peccoud J, Blauvelt MF, Cai Y, Cooper KL, Crasta O, DeLalla EC, Evans C, Folkerts O, Lyons BM, Mane SP, Shelton R, Sweede MA, Waldon SA. (2008) Targeted development of registries of biological parts PLoS ONE 3(7):e2671.

Goler JA, Bramlett BW, Peccoud J. (2008) Genetic design: rising above the sequence. Trends in Biotechnology 26(10):538-44.

Czar MJ, Anderson JC, Bader JS, Peccoud J. (2009) Gene synthesis demystified. Trends in Biotechnology 27(2):63-72.

Czar MJ, Cai Y, Peccoud J. (2009) Writing DNA with GenoCAD Nucleic Acids Research 37:W40-7.

Cai Y, Lux MW, Adam L, Peccoud J. (2009) Modeling structure-function relationships in synthetic DNA sequences using attribute grammars PLoS Comput Biol 5(10):e1000529

Cai Y, Wilson ML, Peccoud J. (2010) GenoCAD for iGEM: a grammatical approach to the design of standard-compliant constructs Nucleic Acids Research 38, 2637-2644.